PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000238035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 505aa    MW: 55959.5 Da    PI: 5.6081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000238035genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1163.8e-3614325319129
            NAM  19 LkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgr 112
                     k+kv gk+l+  ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t++gyWkatg+d++vl  +ge+ g  ktL+f++gr
  MDP0000238035 143 RKRKVMGKRLPY-NFVAEVDIHKYAPWDLPeKsSWQSGDLKWYFFCPTERKYPTGARAKRTTERGYWKATGNDRSVLY-NGEVAGKIKTLIFHTGR 236
                    5899*****999.89**************95345666778**************************************.999************** PP

            NAM 113 apkgektdWvmheyrle 129
                    apkge+tdWvmheyrle
  MDP0000238035 237 APKGERTDWVMHEYRLE 253
                    ***************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF560532.42E-24588IPR020040Ribosomal protein L6, alpha-beta domain
Gene3DG3DSA:3.90.930.129.2E-26787IPR020040Ribosomal protein L6, alpha-beta domain
PfamPF003471.4E-141286IPR020040Ribosomal protein L6, alpha-beta domain
PRINTSPR000592.7E-122339IPR019906Ribosomal protein L6, bacterial-type
PRINTSPR000592.7E-126586IPR019906Ribosomal protein L6, bacterial-type
PROSITE patternPS0052507886IPR002358Ribosomal protein L6, conserved site
PROSITE profilePS5100542.408123275IPR003441NAC domain
SuperFamilySSF1019413.79E-45143275IPR003441NAC domain
PfamPF023651.0E-12146252IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MEAKFFRFLK IVGVGYKARA EAEGRMLYLK LGYSHEVELT VPPAVRVFCF KNNVVCCTGI  60
DKDRVHQFAA AVRSCKPPEV YKGKGIIEFK PLNPINPDHG EQVPLNSPEA ALSSSLRFHS  120
CPPIPAIDAA PPIPSAVANF PHRKRKVMGK RLPYNFVAEV DIHKYAPWDL PEKSSWQSGD  180
LKWYFFCPTE RKYPTGARAK RTTERGYWKA TGNDRSVLYN GEVAGKIKTL IFHTGRAPKG  240
ERTDWVMHEY RLESKDLANR GVPQESYVLC TIFQKEGPGP KNGAQYGAPL MEEDWSDDEA  300
ENCSEAVXHA NMPEPNLVLP SNYNSSITTS TYSXESIHIR XSSESCISDX VPLSCHVPQL  360
VSSNHATVEE PHTSNDDDIL SILACFSEES PSLIKENEKN EELGNVVPIG NASATPHVVS  420
NDIYVTLGDL GKVARVGEDG CSFSSLPNSV CATGQMPRGD DGQYLELDDL GELFNYXDST  480
HTRPPSMFGE PQTLLGEMPF QGETX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B8e-3414528137171NAC domain-containing protein 19
4dul_A8e-3414528137171NAC domain-containing protein 19
1ut7_B8e-3414528137171NO APICAL MERISTEM PROTEIN
1ut7_A8e-3414528137171NO APICAL MERISTEM PROTEIN
1ut4_B8e-3414528137171NO APICAL MERISTEM PROTEIN
1ut4_A8e-3414528137171NO APICAL MERISTEM PROTEIN
3ulx_A8e-3414527635169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381837.10.0PREDICTED: NAC domain-containing protein 67-like
RefseqXP_008381838.10.0PREDICTED: NAC domain-containing protein 67-like
TrEMBLD9ZJ990.0D9ZJ99_MALDO; NAC domain class transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.19e-72NAC domain containing protein 103